SNP Profiles of AMAZ 12 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AG	GG	TT	CT	AC	TT	TT	CC	CT	AA	GG	CT	AG
1._RUQ_334b	_	_	GG	_	_	_	_	TT	_	TT	_	GG	_	AG
2._AMAZ_12	CC	AA	GG	TT	CT	AC	TT	TT	CC	TT	AA	GG	CT	AG
3._RUQ_334	_	AA	GG	TT	_	_	_	TT	_	_	_	_	CT	AG
4._RUQ_334	_	_	GG	_	_	_	_	TT	_	CT	_	GG	_	AG
5._GC-05-158-4-11	CC	AA	CG	CC	CT	_	CT	GT	CT	TT	AT	AG	TT	AG
6._AMAZ_12	CC	AA	CG	CC	CT	_	CT	GT	CT	TT	AT	AG	TT	AG
7._GC-05-158-4-11	CC	AA	CG	CC	CT	_	CT	GT	CT	_	AT	AG	TT	AA
8._AMAZ_12	CC	AA	CG	CC	CT	_	CT	GT	CT	_	AT	AG	TT	AA
9._GC-05-010-1-10	CC	AA	CG	CC	CT	_	CT	GT	CT	TT	AT	AG	TT	AA
10._AMAZ_12	CC	AA	CG	CC	CT	_	CT	GT	CT	TT	AT	AG	TT	AA
11._AMAZ_12	CC	AA	CG	CC	CT	CC	CT	GT	CT	TT	AT	AG	TT	AA
12._GC-05-158-4-11	CC	AA	CG	CC	CT	_	CT	GT	CT	TT	AT	AG	TT	AA
13._GC-05-158-4-11	CC	AA	CG	CC	CT	CC	CT	GT	CT	TT	AT	AG	TT	AA
14._GC-05-158-4-11	CC	AA	CG	CC	CT	_	CT	GT	CT	TT	AT	AG	TT	AA
15._GC-05-010-1-10	CC	AA	CG	CC	CT	_	CT	GT	CT	TT	AT	AG	TT	AA
16._GC-05-010-1-10	CC	AA	CG	CC	CT	_	CT	GT	CT	TT	AT	AG	TT	AA
17._GC-05-010-1-10	CC	AA	CG	CC	CT	_	CT	GT	CT	TT	AT	AG	TT	AA
18._GC-05-010-1-10	CC	AA	CG	CC	CT	_	CT	GT	CT	TT	AT	AG	TT	AA
19._AMAZ_12	CC	AA	CG	CC	CT	_	CT	GT	CT	TT	AT	AG	TT	AA
20._AMAZ_12	CC	AA	CG	CC	CT	_	CT	GT	CT	TT	AT	AG	TT	AA
21._AMAZ_12	CC	AA	CG	CC	CT	_	CT	GT	CT	TT	AT	AG	TT	AA
22._AMAZ_12	CC	AA	CG	CC	CT	_	CT	GT	CT	TT	AT	AG	TT	AA
23._AMAZ_12	CC	AA	CG	CC	CT	_	CT	GT	CT	TT	AT	AG	TT	AA
24._AMAZ_12	CC	AA	CG	CC	CT	_	CT	GT	CT	TT	AT	AG	TT	AA
25._RUQ_334	GG	AA	CC	AA	AG	AC	AA	AA	_	_	AA	GG	AG	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AT	GG	TT	CT	CG	GG	AA	CT	AA	GG	GT	CC	CC
1._RUQ_334b	_	_	_	_	_	CG	GG	AA	_	AA	GG	_	_	CC
2._AMAZ_12	CT	AT	GG	TT	CT	CG	GG	AA	CT	AA	GG	GT	CC	CC
3._RUQ_334	_	_	_	_	TT	CG	GG	_	CT	AA	CG	GT	CC	CC
4._RUQ_334	_	_	_	_	_	GG	GG	AA	_	AA	GG	_	_	AC
5._GC-05-158-4-11	CT	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC
6._AMAZ_12	CT	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC
7._GC-05-158-4-11	CT	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC
8._AMAZ_12	CT	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC
9._GC-05-010-1-10	CT	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC
10._AMAZ_12	CT	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC
11._AMAZ_12	CT	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC
12._GC-05-158-4-11	CT	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC
13._GC-05-158-4-11	CT	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC
14._GC-05-158-4-11	CT	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC
15._GC-05-010-1-10	CT	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC
16._GC-05-010-1-10	CT	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC
17._GC-05-010-1-10	CT	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC
18._GC-05-010-1-10	CT	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC
19._AMAZ_12	CT	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC
20._AMAZ_12	CT	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC
21._AMAZ_12	CT	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC
22._AMAZ_12	CT	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC
23._AMAZ_12	CT	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC
24._AMAZ_12	CT	AT	GG	TT	CT	GG	GT	AA	CT	AC	CC	GT	CT	AC
25._RUQ_334	AG	AT	GG	AA	AG	CG	CC	_	AG	AA	CG	AC	_	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	AG	AT	CC	GG	CG	AC	CC	GT	AC	AT	GG	X_X	X_X
1._RUQ_334b	_	_	_	_	GG	_	_	_	_	AC	_	_	X_X	X_X
2._AMAZ_12	AA	GG	AT	CC	GG	CG	AC	CC	TT	AC	AT	GG	X_X	X_X
3._RUQ_334	AA	_	AT	CC	GG	CG	AC	CC	GT	AC	_	_	X_X	X_X
4._RUQ_334	_	_	_	_	GG	_	_	_	_	AC	_	_	X_X	X_X
5._GC-05-158-4-11	AG	GG	AT	CT	AA	CG	AA	CT	GT	CC	AA	GG	X_X	X_X
6._AMAZ_12	AG	GG	AT	CT	AA	CG	AA	CT	GT	CC	AA	GG	X_X	X_X
7._GC-05-158-4-11	AG	GG	AT	CT	AA	CG	_	CT	GT	_	AA	GG	X_X	X_X
8._AMAZ_12	AG	GG	AT	CT	AA	CG	_	CT	GT	_	AA	GG	X_X	X_X
9._GC-05-010-1-10	AG	GG	AT	CT	AA	CG	_	CT	GT	CC	AA	GG	X_X	X_X
10._AMAZ_12	AG	GG	AT	CT	AA	CG	_	CT	GT	CC	AA	GG	X_X	X_X
11._AMAZ_12	AG	GG	AT	CT	AA	CG	AA	_	GT	CC	AA	GG	X_X	X_X
12._GC-05-158-4-11	AG	GG	AT	CT	AA	CG	AA	CT	GT	CC	AA	GG	X_X	X_X
13._GC-05-158-4-11	AG	GG	AT	CT	AA	CG	AA	_	GT	CC	AA	GG	X_X	X_X
14._GC-05-158-4-11	AG	GG	AT	CT	AA	CG	AA	CT	GT	CC	AA	GG	X_X	X_X
15._GC-05-010-1-10	AG	GG	AT	CT	AA	CG	AA	CT	GT	CC	AA	GG	X_X	X_X
16._GC-05-010-1-10	AG	GG	AT	CT	AA	CG	AA	CT	GT	CC	AA	GG	X_X	X_X
17._GC-05-010-1-10	AG	GG	AT	CT	AA	CG	AA	CT	GT	CC	AA	GG	X_X	X_X
18._GC-05-010-1-10	AG	GG	AT	CT	AA	CG	AA	CT	GT	CC	AA	GG	X_X	X_X
19._AMAZ_12	AG	GG	AT	CT	AA	CG	AA	CT	GT	CC	AA	GG	X_X	X_X
20._AMAZ_12	AG	GG	AT	CT	AA	CG	AA	CT	GT	CC	AA	GG	X_X	X_X
21._AMAZ_12	AG	GG	AT	CT	AA	CG	AA	CT	GT	CC	AA	GG	X_X	X_X
22._AMAZ_12	AG	GG	AT	CT	AA	CG	AA	CT	GT	CC	AA	GG	X_X	X_X
23._AMAZ_12	AG	GG	AT	CT	AA	CG	AA	CT	GT	CC	AA	GG	X_X	X_X
24._AMAZ_12	AG	GG	AT	CT	AA	CG	AA	CT	GT	CC	AA	GG	X_X	X_X
25._RUQ_334	_	GG	AT	GG	GG	CG	AC	GG	AC	AC	AT	GG	X_X	X_X

Input profile: AMAZ_12 RUQ_334

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

1._AMAZ_12 RUQ_334b

96.2 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

2._AMAZ_12

95 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B B94 T2

Dapeng Zhang, 2016

3._AMAZ_12 RUQ_334

93.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

4._AMAZ_12 RUQ_334

92.3 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

5._AMAZ_12 GC-05-158-4-11

65.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

6._AMAZ_12

65.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5411 4

Dapeng Zhang, 2016

7._AMAZ_12 GC-05-158-4-11

65.3 %
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

8._AMAZ_12

65.3 %
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5411 5

Dapeng Zhang, 2016

9._AMAZ_12 GC-05-010-1-10

64.5 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

10._AMAZ_12

64.5 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5110 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

11._AMAZ_12

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5411 2 > FP

Dapeng Zhang, 2016

12._AMAZ_12 GC-05-158-4-11

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

13._AMAZ_12 GC-05-158-4-11

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP3

14._AMAZ_12 GC-05-158-4-11

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP4

15._AMAZ_12 GC-05-010-1-10

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

16._AMAZ_12 GC-05-010-1-10

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP2

17._AMAZ_12 GC-05-010-1-10

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

18._AMAZ_12 GC-05-010-1-10

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1

19._AMAZ_12

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5110 3

Dapeng Zhang, 2016

20._AMAZ_12

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5110 5

Dapeng Zhang, 2016

21._AMAZ_12

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5110 2 > FP

Dapeng Zhang, 2016

22._AMAZ_12

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5110 4 > FP

Dapeng Zhang, 2016

23._AMAZ_12

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5411 3

Dapeng Zhang, 2016

24._AMAZ_12

64.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5411 1 > FP

Dapeng Zhang, 2016

25._AMAZ_12 RUQ_334

50 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25